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Showing :
volcano plot
•
reset
1
vote
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reply
599
views
diffBind volcano plot error
DiffBind
volcano plot
software error
4.5 years ago
rbronste
▴ 60
0
votes
2
replies
943
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 4.7 years ago by
Michael Love
41k • written 4.7 years ago by
adeler001
• 0
0
votes
4
replies
1.3k
views
Volcano Plot after using Treat Function
Volcano plot
Parameters
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
Sanches
• 0
2
votes
1
reply
1.2k
views
Strange limma plot
limma
volcano plot
updated 7.0 years ago by
Gordon Smyth
50k • written 7.0 years ago by
yul
• 0
0
votes
9
replies
1.7k
views
Volcano plot non-numeric argument error
volcano plot
edgr
7.2 years ago
elena.capel
▴ 10
3
votes
2
replies
1.3k
views
Differential gene expression of Microarray data
microarray
limma
volcano plot
updated 9.5 years ago by
Gordon Smyth
50k • written 9.5 years ago by
jyoti_cad
• 0
6 results • Page
1 of 1
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Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
Votes
Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
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James W. MacDonald
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jeffrey.maurer
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▴ 200
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